IL_5LMU_053

3D structure

PDB id

5LMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

5LMU|1|A|A|1492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMU_053 not in the Motif Atlas

Homologous match to IL_4LFB_069

Geometric discrepancy: 0.5574

The information below is about IL_4LFB_069

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5LMU|1|A|C|1407
5LMU|1|A|A|1408
5LMU|1|A|C|1409
*
5LMU|1|A|G|1491
5LMU|1|A|A|1492
5LMU|1|A|A|1493
5LMU|1|A|G|1494

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain X

Translation initiation factor IF-3

Chain Y

mRNA