IL_5LMU_055

3D structure

PDB id

5LMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMU_055 not in the Motif Atlas

Homologous match to IL_4LFB_060

Geometric discrepancy: 0.2068

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5LMU|1|A|G|1416
5LMU|1|A|G|1417
5LMU|1|A|A|1418
5LMU|1|A|G|1419
*
5LMU|1|A|U|1481
5LMU|1|A|G|1482
5LMU|1|A|A|1483
5LMU|1|A|C|1484

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain X

Translation initiation factor IF-3