IL_5LMU_056

3D structure

PDB id

5LMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMU_056 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.1241

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5LMU|1|A|C|1431
5LMU|1|A|G|1432
5LMU|1|A|A|1433
5LMU|1|A|A|1434
5LMU|1|A|G|1435
*
5LMU|1|A|C|1466
5LMU|1|A|G|1467
5LMU|1|A|A|1468
5LMU|1|A|G|1469

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20