IL_5LQW_006
3D structure
- PDB id
- 5LQW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast activated spliceosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UUCC*GAA
- Length
- 7 nucleotides
- Bulged bases
- 5LQW|1|6|C|66
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LQW_006 not in the Motif Atlas
- Geometric match to IL_1XJR_003
- Geometric discrepancy: 0.2924
- The information below is about IL_1XJR_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
5LQW|1|6|U|64
5LQW|1|6|U|65
5LQW|1|6|C|66
5LQW|1|6|C|67
*
5LQW|1|6|G|81
5LQW|1|6|A|82
5LQW|1|6|A|83
Current chains
- Chain 6
- U6 snRNA
Nearby chains
- Chain 2
- U2 splicesomal small nuclear RNA; U2 snRNA
- Chain 9
- actin pre-mRNA
- Chain A
- Pre-mRNA-splicing factor 8
- Chain D
- Pre-mRNA-splicing factor SLT11
- Chain K
- Pre-mRNA-splicing factor PRP46
- Chain M
- Pre-mRNA-processing protein 45
- Chain R
- Pre-mRNA-splicing factor CLF1
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