IL_5LR4_005
3D structure
- PDB id
- 5LR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNA duplex has central consecutive GA pairs flanked by G-U basepairs with a methyl group on the adenine N6
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.8 Å
Loop
- Sequence
- CGG(6MZ)UG*CGG(6MZ)UG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LR4_005 not in the Motif Atlas
- Geometric match to IL_5LR3_002
- Geometric discrepancy: 0.3127
- The information below is about IL_5LR3_002
- Detailed Annotation
- Quadruple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_06136.2
- Basepair signature
- cWW-tHS-cWW-tHS-tSH-tSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
5LR4|1|C|C|3
5LR4|1|C|G|4
5LR4|1|C|G|5
5LR4|1|C|6MZ|6
5LR4|1|C|U|7
5LR4|1|C|G|8
*
5LR4|1|D|C|3
5LR4|1|D|G|4
5LR4|1|D|G|5
5LR4|1|D|6MZ|6
5LR4|1|D|U|7
5LR4|1|D|G|8
Current chains
- Chain C
- RNA (5'-R(*GP*(CBV)P*CP*GP*GP*(6MZ)P*UP*GP*GP*C)-3')
- Chain D
- RNA (5'-R(*GP*(CBV)P*CP*GP*GP*(6MZ)P*UP*GP*GP*C)-3')
Nearby chains
- Chain A
- RNA (5'-R(*GP*(CBV)P*CP*GP*GP*(6MZ)P*UP*GP*GP*C)-3')
- Chain B
- RNA (5'-R(*GP*(CBV)P*CP*GP*GP*(6MZ)P*UP*GP*GP*C)-3')
Coloring options: