IL_5LYB_003

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

5LYB|1|1|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_003 not in the Motif Atlas

Homologous match to IL_5TBW_003

Geometric discrepancy: 0.0496

The information below is about IL_5TBW_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5LYB|1|1|A|13
5LYB|1|1|U|14
5LYB|1|1|C|15
*
5LYB|1|4|G|144
5LYB|1|4|U|145

Current chains

Chain 1

25S rRNA

Chain 4

5.8S rRNA

Nearby chains

Chain L8

60S ribosomal protein L8-A

Chain M5

60S ribosomal protein L15-A

Chain N5

60S ribosomal protein L25