IL_5LYB_108

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

5LYB|1|1|A|2941, 5LYB|1|1|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_108 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.0918

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

5LYB|1|1|C|2881
5LYB|1|1|U|2882
*
5LYB|1|1|A|2940
5LYB|1|1|A|2941
5LYB|1|1|C|2942
5LYB|1|1|G|2943

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

aminoacyl-tRNA fragment ACCPmn

Chain L3

60S ribosomal protein L3

Chain M6

60S ribosomal protein L16-A

Chain N3

60S ribosomal protein L23-A