IL_5LYB_162

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UACA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_162 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.265

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5LYB|1|2|U|517
5LYB|1|2|A|518
5LYB|1|2|C|519
5LYB|1|2|A|520
*
5LYB|1|2|U|532
5LYB|1|2|U|533
5LYB|1|2|A|534
5LYB|1|2|A|535

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S9

40S ribosomal protein S9-A