IL_5LYB_170

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GCCGGUC*GGAUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LYB|1|2|G|652
5LYB|1|2|C|653
5LYB|1|2|C|654
5LYB|1|2|G|655
5LYB|1|2|G|656
5LYB|1|2|U|657
5LYB|1|2|C|658
*
5LYB|1|2|G|676
5LYB|1|2|G|677
5LYB|1|2|A|678
5LYB|1|2|U|679
5LYB|1|2|U|680
5LYB|1|2|U|681
5LYB|1|2|C|682

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S9

40S ribosomal protein S9-A