IL_5LYB_171
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LYB_171 not in the Motif Atlas
- Geometric match to IL_5J7L_337
- Geometric discrepancy: 0.3693
- The information below is about IL_5J7L_337
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_51387.2
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 20
Unit IDs
5LYB|1|2|U|745
5LYB|1|2|A|746
5LYB|1|2|C|747
*
5LYB|1|2|G|802
5LYB|1|2|A|803
5LYB|1|2|A|804
5LYB|1|2|U|805
5LYB|1|2|A|806
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain C1
- 40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S Ribosomal Protein S11-A
- Chain D2
- 40S ribosomal protein S22-A
- Chain D3
- 40S ribosomal protein S23-A
- Chain S7
- 40S ribosomal protein S7-A
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