IL_5LYB_173

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAAAAAAUUA*UAUAUUAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LYB|1|2|G|751
5LYB|1|2|A|752
5LYB|1|2|A|753
5LYB|1|2|A|754
5LYB|1|2|A|755
5LYB|1|2|A|756
5LYB|1|2|A|757
5LYB|1|2|U|758
5LYB|1|2|U|759
5LYB|1|2|A|760
*
5LYB|1|2|U|790
5LYB|1|2|A|791
5LYB|1|2|U|792
5LYB|1|2|A|793
5LYB|1|2|U|794
5LYB|1|2|U|795
5LYB|1|2|A|796
5LYB|1|2|G|797
5LYB|1|2|C|798

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C1

40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S Ribosomal Protein S11-A

Chain D2

40S ribosomal protein S22-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A