IL_5LYB_180

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

5LYB|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_180 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.3642

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5LYB|1|2|U|893
5LYB|1|2|U|894
5LYB|1|2|G|895
5LYB|1|2|U|896
5LYB|1|2|C|897
5LYB|1|2|A|898
5LYB|1|2|G|899
*
5LYB|1|2|C|910
5LYB|1|2|U|911
5LYB|1|2|U|912
5LYB|1|2|G|913
5LYB|1|2|G|914
5LYB|1|2|A|915
5LYB|1|2|U|916
5LYB|1|2|U|917
5LYB|1|2|U|918
5LYB|1|2|A|919

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S Ribosomal Protein S14

Chain S1

40S ribosomal protein S1-A