IL_5LYB_201

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_201 not in the Motif Atlas

Geometric match to IL_5TBW_039

Geometric discrepancy: 0.2116

The information below is about IL_5TBW_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

5LYB|1|2|C|1306
5LYB|1|2|U|1307
5LYB|1|2|G|1308
*
5LYB|1|2|C|1317
5LYB|1|2|G|1318

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C7

40S ribosomal protein S17-A

Chain D6

40S ribosomal protein S26-B