IL_5LYB_204

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

5LYB|1|2|U|1370, 5LYB|1|2|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_204 not in the Motif Atlas

Homologous match to IL_4V88_457

Geometric discrepancy: 0.2244

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5LYB|1|2|G|1352
5LYB|1|2|U|1353
5LYB|1|2|G|1354
*
5LYB|1|2|U|1369
5LYB|1|2|U|1370
5LYB|1|2|A|1371
5LYB|1|2|U|1372
5LYB|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain C9

40S ribosomal protein S19-A

Chain D0

40S ribosomal protein S20