IL_5LYB_235
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CC*GAG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LYB_235 not in the Motif Atlas
- Homologous match to IL_5TBW_004
- Geometric discrepancy: 0.085
- The information below is about IL_5TBW_004
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_05035.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 38
Unit IDs
5LYB|1|5|C|27
5LYB|1|5|C|28
*
5LYB|1|5|G|56
5LYB|1|5|A|57
5LYB|1|5|G|58
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain m3
- 60S ribosomal protein L13-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain o5
- 60S ribosomal protein L35-A
- Chain o7
- 60S ribosomal protein L37-A
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