IL_5LYB_274

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_274 not in the Motif Atlas

Homologous match to IL_5TBW_041

Geometric discrepancy: 0.0768

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5LYB|1|5|A|1006
5LYB|1|5|U|1007
5LYB|1|5|U|1008
5LYB|1|5|A|1009
*
5LYB|1|5|U|1041
5LYB|1|5|U|1042
5LYB|1|5|C|1043
5LYB|1|5|U|1044

Current chains

Chain 5

25S rRNA

Nearby chains

Chain l5

60S ribosomal protein L5

Chain m0

60S ribosomal protein L10