IL_5LYB_325

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

5LYB|1|5|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_325 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.0468

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

5LYB|1|5|U|2423
5LYB|1|5|A|2424
5LYB|1|5|G|2425
*
5LYB|1|5|U|2604
5LYB|1|5|G|2605
5LYB|1|5|G|2606
5LYB|1|5|G|2607

Current chains

Chain 5

25S rRNA

Nearby chains

Chain l2

60S ribosomal protein L2-A

Chain m5

60S ribosomal protein L15-A

Chain q2

60S ribosomal protein L42-A