IL_5LYB_334

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_334 not in the Motif Atlas

Geometric match to IL_4V9F_083

Geometric discrepancy: 0.106

The information below is about IL_4V9F_083

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5LYB|1|5|U|2826
5LYB|1|5|U|2827
5LYB|1|5|G|2828
*
5LYB|1|5|U|2862
5LYB|1|5|G|2863

Current chains

Chain 5

25S rRNA

Nearby chains

Chain a

aminoacyl-tRNA fragment ACCPmn

Chain m0

60S ribosomal protein L10