IL_5LYB_388
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GGA*UAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LYB_388 not in the Motif Atlas
- Homologous match to IL_4V88_405
- Geometric discrepancy: 0.0486
- The information below is about IL_4V88_405
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.1
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 48
Unit IDs
5LYB|1|6|G|389
5LYB|1|6|G|390
5LYB|1|6|A|391
*
5LYB|1|6|U|406
5LYB|1|6|A|407
5LYB|1|6|C|408
Current chains
- Chain 6
- 18S rRNA
Nearby chains
- Chain n3
- 60S ribosomal protein L23-A
- Chain n4
- 60S ribosomal protein L24-A
- Chain s6
- 40S ribosomal protein S6-A
- Chain s8
- 40S ribosomal protein S8-A
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