IL_5LYB_402
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- UUGGC*GAUUUCCAA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LYB_402 not in the Motif Atlas
- Homologous match to IL_4V88_420
- Geometric discrepancy: 0.0891
- The information below is about IL_4V88_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_97253.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
5LYB|1|6|U|649
5LYB|1|6|U|650
5LYB|1|6|G|651
5LYB|1|6|G|652
5LYB|1|6|C|653
*
5LYB|1|6|G|677
5LYB|1|6|A|678
5LYB|1|6|U|679
5LYB|1|6|U|680
5LYB|1|6|U|681
5LYB|1|6|C|682
5LYB|1|6|C|683
5LYB|1|6|A|684
5LYB|1|6|A|685
Current chains
- Chain 6
- 18S rRNA
Nearby chains
- Chain d2
- 40S ribosomal protein S22-A
- Chain s9
- 40S ribosomal protein S9-A
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