IL_5LYB_442

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_442 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.0449

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5LYB|1|6|G|1540
5LYB|1|6|G|1541
5LYB|1|6|G|1542
5LYB|1|6|A|1543
5LYB|1|6|U|1544
5LYB|1|6|A|1545
*
5LYB|1|6|U|1566
5LYB|1|6|U|1567
5LYB|1|6|C|1568
5LYB|1|6|A|1569
5LYB|1|6|A|1570
5LYB|1|6|C|1571

Current chains

Chain 6

18S rRNA

Nearby chains

Chain c8

40S ribosomal protein S18-A

Chain c9

40S ribosomal protein S19-A