IL_5LYB_481

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

5LYB|1|5|C|1016, 5LYB|1|5|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_481 not in the Motif Atlas

Homologous match to IL_8C3A_508

Geometric discrepancy: 0.4287

The information below is about IL_8C3A_508

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07195.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5LYB|1|5|U|1014
5LYB|1|5|U|1015
5LYB|1|5|C|1016
5LYB|1|5|C|1017
5LYB|1|5|G|1018
*
5LYB|1|5|U|1034
5LYB|1|5|G|1035
5LYB|1|5|A|1036

Current chains

Chain 5

25S rRNA

Nearby chains

Chain m0

60S ribosomal protein L10

Chain m1

60S ribosomal protein L11-B

Chain sM

Suppressor protein STM1,Suppressor protein STM1,Ribosome-bound protein Stm1