IL_5LYB_485

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_485 not in the Motif Atlas

Homologous match to IL_8P9A_315

Geometric discrepancy: 0.2614

The information below is about IL_8P9A_315

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

5LYB|1|5|G|2206
5LYB|1|5|A|2207
5LYB|1|5|A|2208
5LYB|1|5|U|2209
5LYB|1|5|G|2210
*
5LYB|1|5|C|2235
5LYB|1|5|G|2236
5LYB|1|5|C|2237

Current chains

Chain 5

25S rRNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA