IL_5LYB_488

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCUUG*CUUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_488 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.2712

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5LYB|1|6|C|708
5LYB|1|6|C|709
5LYB|1|6|U|710
5LYB|1|6|U|711
5LYB|1|6|G|712
*
5LYB|1|6|C|726
5LYB|1|6|U|727
5LYB|1|6|U|728
5LYB|1|6|G|729
5LYB|1|6|G|730

Current chains

Chain 6

18S rRNA

Nearby chains