IL_5LYB_489

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_489 not in the Motif Atlas

Homologous match to IL_8P9A_415

Geometric discrepancy: 0.4296

The information below is about IL_8P9A_415

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5LYB|1|6|U|822
5LYB|1|6|G|823
5LYB|1|6|G|824
*
5LYB|1|6|C|848
5LYB|1|6|C|849
5LYB|1|6|A|850

Current chains

Chain 6

18S rRNA

Nearby chains

Chain c1

40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S Ribosomal Protein S11-A

Chain m9

60S ribosomal protein L19-A