IL_5LYS_001

3D structure

PDB id

5LYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of 7SK 5'-hairpin - Gold derivative

Experimental method

X-RAY DIFFRACTION

Resolution

2.32 Å

Loop

Sequence

CAC*GCUAG

Length

8 nucleotides

Bulged bases

5LYS|1|A|A|34, 5LYS|1|A|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYS_001 not in the Motif Atlas

Homologous match to IL_5LYS_005

Geometric discrepancy: 0.1034

The information below is about IL_5LYS_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44325.1

Basepair signature

cWW-cWH-cWW-L

Number of instances in this motif group

1

Unit IDs

5LYS|1|A|C|33
5LYS|1|A|A|34
5LYS|1|A|C|35
*
5LYS|1|A|G|74||A
5LYS|1|A|C|75
5LYS|1|A|U|76
5LYS|1|A|A|77
5LYS|1|A|G|78

Current chains

Chain A

7SK RNA

Nearby chains

Chain B

7SK RNA