IL_5LYV_003

3D structure

PDB id

5LYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of 7SK 5'-hairpin - Osmium derivative

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

AUUG*CU

Length

6 nucleotides

Bulged bases

5LYV|1|A|U|41||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYV_003 not in the Motif Atlas

Homologous match to IL_5LYS_007

Geometric discrepancy: 0.0897

The information below is about IL_5LYS_007

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

5LYV|1|A|A|39||A
5LYV|1|A|U|40||A
5LYV|1|A|U|41||A
5LYV|1|A|G|42||A
*
5LYV|1|A|C|67
5LYV|1|A|U|68

Current chains

Chain A

7SK RNA

Nearby chains

Chain B

7SK RNA