IL_5LZA_052

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZA_052 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1066

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5LZA|1|A|C|1417
5LZA|1|A|G|1418
5LZA|1|A|A|1419
5LZA|1|A|A|1420
5LZA|1|A|G|1421
*
5LZA|1|A|C|1577
5LZA|1|A|U|1578
5LZA|1|A|A|1579
5LZA|1|A|A|1580
5LZA|1|A|G|1581

Current chains

Chain A

23S ribosomal RNA

Nearby chains