IL_5LZA_168
3D structure
- PDB id
- 5LZA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUGC*GAGGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZA_168 not in the Motif Atlas
- Geometric match to IL_5J7L_053
- Geometric discrepancy: 0.1265
- The information below is about IL_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42032.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5LZA|1|a|C|1158
5LZA|1|a|U|1159
5LZA|1|a|G|1160
5LZA|1|a|C|1161
*
5LZA|1|a|G|1175
5LZA|1|a|A|1176
5LZA|1|a|G|1177
5LZA|1|a|G|1178
5LZA|1|a|A|1179
5LZA|1|a|A|1180
5LZA|1|a|G|1181
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain i
- 30S ribosomal protein S9
Coloring options: