IL_5LZC_019

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZC_019 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.1245

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

5LZC|1|A|U|703
5LZC|1|A|G|704
5LZC|1|A|A|705
5LZC|1|A|A|706
5LZC|1|A|G|707
*
5LZC|1|A|U|724
5LZC|1|A|G|725
5LZC|1|A|G|726
5LZC|1|A|A|727
5LZC|1|A|G|728

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2