IL_5LZC_036

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5LZC|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZC_036 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.1319

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5LZC|1|A|U|1018
5LZC|1|A|U|1019
5LZC|1|A|A|1020
5LZC|1|A|A|1021
5LZC|1|A|G|1022
5LZC|1|A|U|1023
5LZC|1|A|G|1024
*
5LZC|1|A|C|1140
5LZC|1|A|U|1141
5LZC|1|A|A|1142
5LZC|1|A|A|1143
5LZC|1|A|A|1144

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain J

50S ribosomal protein L13