IL_5LZC_057

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGUAGG*CUGAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZC_057 not in the Motif Atlas

Geometric match to IL_8ZA4_003

Geometric discrepancy: 0.3896

The information below is about IL_8ZA4_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

5LZC|1|A|U|1474
5LZC|1|A|G|1475
5LZC|1|A|U|1476
5LZC|1|A|A|1477
5LZC|1|A|G|1478
5LZC|1|A|G|1479
*
5LZC|1|A|C|1512
5LZC|1|A|U|1513
5LZC|1|A|G|1514
5LZC|1|A|A|1515
5LZC|1|A|G|1516
5LZC|1|A|G|1517

Current chains

Chain A

23S ribosomal RNA

Nearby chains