IL_5LZC_070

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5LZC|1|A|A|1801, 5LZC|1|A|C|1816, 5LZC|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZC_070 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0927

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5LZC|1|A|U|1798
5LZC|1|A|G|1799
5LZC|1|A|C|1800
5LZC|1|A|A|1801
5LZC|1|A|A|1802
5LZC|1|A|A|1803
5LZC|1|A|C|1804
*
5LZC|1|A|G|1813
5LZC|1|A|G|1814
5LZC|1|A|A|1815
5LZC|1|A|C|1816
5LZC|1|A|G|1817
5LZC|1|A|U|1818
5LZC|1|A|A|1819
5LZC|1|A|U|1820
5LZC|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA