3D structure

PDB id
5LZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
UGAAGAAG*UGUAAAG
Length
15 nucleotides
Bulged bases
5LZC|1|a|A|412
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZC_137 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.2101
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

5LZC|1|a|U|409
5LZC|1|a|G|410
5LZC|1|a|A|411
5LZC|1|a|A|412
5LZC|1|a|G|413
5LZC|1|a|A|414
5LZC|1|a|A|415
5LZC|1|a|G|416
*
5LZC|1|a|U|427
5LZC|1|a|G|428
5LZC|1|a|U|429
5LZC|1|a|A|430
5LZC|1|a|A|431
5LZC|1|a|A|432
5LZC|1|a|G|433

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain d
30S ribosomal protein S4
Chain z
Selenocysteine-specific elongation factor

Coloring options:


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