3D structure

PDB id
5LZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
AAUUC*GUUAU
Length
10 nucleotides
Bulged bases
5LZC|1|A|U|846, 5LZC|1|A|U|931
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZC_182 not in the Motif Atlas
Homologous match to IL_5J7L_399
Geometric discrepancy: 0.2139
The information below is about IL_5J7L_399
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_96236.1
Basepair signature
cWW-tWW-cWW-L-cWW
Number of instances in this motif group
1

Unit IDs

5LZC|1|A|A|844
5LZC|1|A|A|845
5LZC|1|A|U|846
5LZC|1|A|U|847
5LZC|1|A|C|848
*
5LZC|1|A|G|930
5LZC|1|A|U|931
5LZC|1|A|U|932
5LZC|1|A|A|933
5LZC|1|A|U|934

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain Z
50S ribosomal protein L30

Coloring options:


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