IL_5LZC_201

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AGAAU*GGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZC_201 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.0979

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5LZC|1|a|A|673
5LZC|1|a|G|674
5LZC|1|a|A|675
5LZC|1|a|A|676
5LZC|1|a|U|677
*
5LZC|1|a|G|713
5LZC|1|a|G|714
5LZC|1|a|A|715
5LZC|1|a|A|716
5LZC|1|a|U|717

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain f

30S ribosomal protein S6

Chain k

30S ribosomal protein S11

Chain r

30S ribosomal protein S18

Chain u

30S ribosomal protein S21