IL_5LZD_051

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

5LZD|1|A|U|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZD_051 not in the Motif Atlas

Homologous match to IL_5J7L_294

Geometric discrepancy: 0.1899

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5LZD|1|A|U|1415
5LZD|1|A|G|1416
*
5LZD|1|A|C|1582
5LZD|1|A|A|1583
5LZD|1|A|U|1584
5LZD|1|A|C|1585
5LZD|1|A|A|1586
5LZD|1|A|G|1587

Current chains

Chain A

23S ribosomal RNA

Nearby chains