IL_5LZD_086

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGUAGGAUAGGU*ACCC

Length

17 nucleotides

Bulged bases

5LZD|1|A|U|2111, 5LZD|1|A|G|2112, 5LZD|1|A|U|2118, 5LZD|1|A|C|2178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZD|1|A|G|2110
5LZD|1|A|U|2111
5LZD|1|A|G|2112
5LZD|1|A|U|2113
5LZD|1|A|A|2114
5LZD|1|A|G|2115
5LZD|1|A|G|2116
5LZD|1|A|A|2117
5LZD|1|A|U|2118
5LZD|1|A|A|2119
5LZD|1|A|G|2120
5LZD|1|A|G|2121
5LZD|1|A|U|2122
*
5LZD|1|A|A|2176
5LZD|1|A|C|2177
5LZD|1|A|C|2178
5LZD|1|A|C|2179

Current chains

Chain A

23S ribosomal RNA

Nearby chains