IL_5LZD_087

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGGGAGG*CCGACCUUGAAAUACCA

Length

24 nucleotides

Bulged bases

5LZD|1|A|G|2168, 5LZD|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZD|1|A|U|2122
5LZD|1|A|G|2123
5LZD|1|A|G|2124
5LZD|1|A|G|2125
5LZD|1|A|A|2126
5LZD|1|A|G|2127
5LZD|1|A|G|2128
*
5LZD|1|A|C|2160
5LZD|1|A|C|2161
5LZD|1|A|G|2162
5LZD|1|A|A|2163
5LZD|1|A|C|2164
5LZD|1|A|C|2165
5LZD|1|A|U|2166
5LZD|1|A|U|2167
5LZD|1|A|G|2168
5LZD|1|A|A|2169
5LZD|1|A|A|2170
5LZD|1|A|A|2171
5LZD|1|A|U|2172
5LZD|1|A|A|2173
5LZD|1|A|C|2174
5LZD|1|A|C|2175
5LZD|1|A|A|2176

Current chains

Chain A

23S ribosomal RNA

Nearby chains