IL_5LZD_089

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZD_089 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.3055

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5LZD|1|A|U|2139
5LZD|1|A|G|2140
5LZD|1|A|G|2141
*
5LZD|1|A|C|2150
5LZD|1|A|U|2151
5LZD|1|A|G|2152

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S11