IL_5LZD_138

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

5LZD|1|a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZD_138 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1389

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5LZD|1|a|U|409
5LZD|1|a|G|410
5LZD|1|a|A|411
5LZD|1|a|A|412
5LZD|1|a|G|413
5LZD|1|a|A|414
5LZD|1|a|A|415
5LZD|1|a|G|416
*
5LZD|1|a|U|427
5LZD|1|a|G|428
5LZD|1|a|U|429
5LZD|1|a|A|430
5LZD|1|a|A|431
5LZD|1|a|A|432
5LZD|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain z

Selenocysteine-specific elongation factor