IL_5LZD_158

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

5LZD|1|a|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZD_158 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.0919

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

5LZD|1|a|G|925
5LZD|1|a|G|926
5LZD|1|a|G|927
*
5LZD|1|a|U|1390
5LZD|1|a|U|1391

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain x

SECIS mRNA