IL_5LZD_185

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

5LZD|1|x|U|120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZD_185 not in the Motif Atlas

Geometric match to IL_2PJP_001

Geometric discrepancy: 0.2132

The information below is about IL_2PJP_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5LZD|1|x|G|119
5LZD|1|x|U|120
5LZD|1|x|U|121
*
5LZD|1|x|A|132
5LZD|1|x|C|133

Current chains

Chain x

SECIS mRNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain z

Selenocysteine-specific elongation factor