IL_5LZS_010

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

5LZS|1|5|C|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZS_010 not in the Motif Atlas

Geometric match to IL_1S03_006

Geometric discrepancy: 0.3194

The information below is about IL_1S03_006

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

5LZS|1|5|C|125
5LZS|1|5|C|126
*
5LZS|1|5|G|142
5LZS|1|5|C|143
5LZS|1|5|G|144

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain G

eL8

Chain N

Ribosomal protein L15

Chain X

uL23

Chain h

uL29