IL_5LZS_052

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZS_052 not in the Motif Atlas

Homologous match to IL_8C3A_029

Geometric discrepancy: 0.0987

The information below is about IL_8C3A_029

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5LZS|1|5|C|1520
5LZS|1|5|C|1521
5LZS|1|5|G|1522
*
5LZS|1|5|C|1655
5LZS|1|5|U|1656
5LZS|1|5|G|1657

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain a

uL15