IL_5LZS_055

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZS_055 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0908

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

5LZS|1|5|C|1551
5LZS|1|5|G|1552
5LZS|1|5|A|1553
5LZS|1|5|A|1554
5LZS|1|5|G|1555
*
5LZS|1|5|U|1572
5LZS|1|5|G|1573
5LZS|1|5|G|1574
5LZS|1|5|A|1575
5LZS|1|5|G|1576

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain R

eL19

Chain p

eL43