IL_5LZT_038

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UCU*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZT_038 not in the Motif Atlas

Geometric match to IL_7A0S_031

Geometric discrepancy: 0.2229

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5LZT|1|5|U|980
5LZT|1|5|C|981
5LZT|1|5|U|982
*
5LZT|1|5|G|1273
5LZT|1|5|A|1274
5LZT|1|5|G|1275

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

eL6

Chain F

uL30

Chain b

eL29