IL_5LZT_083

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

5LZT|1|5|U|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZT_083 not in the Motif Atlas

Geometric match to IL_4LFB_046

Geometric discrepancy: 0.2457

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5LZT|1|5|C|2083
5LZT|1|5|U|2084
5LZT|1|5|G|2085
*
5LZT|1|5|C|2272
5LZT|1|5|G|2273

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain F

uL30

Chain Q

eL18

Chain e

eL32