IL_5LZT_189

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZT_189 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2007

The information below is about IL_4WFL_001

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5LZT|1|9|C|188
5LZT|1|9|U|189
5LZT|1|9|G|190
5LZT|1|9|A|191
5LZT|1|9|C|192
*
5LZT|1|9|G|207
5LZT|1|9|G|208
5LZT|1|9|A|209
5LZT|1|9|U|210
5LZT|1|9|G|211

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain II

eS8