IL_5LZU_014

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

5LZU|1|5|C|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_014 not in the Motif Atlas

Homologous match to IL_8GLP_015

Geometric discrepancy: 0.4412

The information below is about IL_8GLP_015

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

5LZU|1|5|C|195
5LZU|1|5|C|196
*
5LZU|1|5|G|244
5LZU|1|5|C|245
5LZU|1|5|G|246

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

uL4

Chain Y

uL24